Some random ideas on the subject....
Like almost all interesting engineering projects, there's a whole bunch of interacting choices. The uniflow can be more efficient than counterflow engines because the decreased heat leakage allows for much greater expansion in a single cylinder. In order to realize this efficiency, the uniflow typically uses significantly larger cylinders, and admits steam over a much shorter period. This means the amount of steam to be admitted is actually fairly small, and the intake valve size is not particularly critical. Poppet valves are a natural in this application; Lentz valve gear made them work well w/ eccentrics, but a rotating cam can work as well. Bash valves are certainly simple, but lack a certain design 'elegance'

. By conventional engine practice, the clearance should be held as small as practical - a few percent.
I'd reason about the required valve sizes based on gas engine practice, since you can get a pretty good idea of effective sizes of a poppet valve by looking at cylinder fill rates at rpm of maximum torque on a naturally aspirated engine. I'd choose a small industrial engine for this; they're known for pretty conservative cam timing and good slow speed behavior. Remember that max flow of an automotive poppet valve is reached at 1/4 valve diameter opening - no more is needed.
Keep in mind that a uniflow engine w/o aux. exhaust valves or efficiency-robbing extra clearance will require at least 20-25 inches Hg vacuum on the exhaust side to prevent excessive compression, so if you're actually going to run this engine, a condenser of some sort is required. If you can leverage the university steam plant as a source of steam, a steam ejector can be used along w/ some copper tube and a large container of water to create sufficient vacuum for tests. Plumbing the cylinder drains with significant piping away from the cylinder before the valve will let you use the volume of the pipe as aux compression space -this is handy for starting the engine If the drain valves are below the cylinder, that space will soon fill w condensate and remove the effect of the extra volume.
Remaining steam in the cylinder is compressed adiabatically; w/o sufficient vacuum the pressure can exceeed the inlet pressure. Unbalanced poppet valves are thus a natural in this application, as they function as automatic safety valves if vacuum is lost. Due to this compression, single cylinder uniflow engines require healthy flywheels to run smoothly, particularly at low RPM. The requisite flywheel size may be calculated using energy methods; don't forget to include piston and connecting rod kinetic energy as it all helps. If you use a piston valve, you will need to include a poppet-style safety to prevent breaking things if you either lose vacuum or a slug of water is ingested.
Some interesting data points from the literature: typical uniflow full load BMEP w/ 200-250 psig inlet is 50-60 psi. Uniflows would typically be efficient from perhaps 1/4 full load to 50% or more over; the large cylinder size makes large overloads possible. Remember there are high peak loads due to the large cylinder; uniflow engines should be ruggedly built for their power output w/ ample bearings and a stiff connecting rod.
As you may gather, I'm designing a uniflow engine for my next steam boat

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Good luck w/ your project... it will take some time.
- Bart